Variant report

Variant	rs729119
Chromosome Location	chr9:16155596-16155597
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11999673	0.96[EUR][1000 genomes]
rs12004737	0.95[EUR][1000 genomes]
rs55694526	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56077305	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56268371	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7030464	0.82[EUR][1000 genomes]
rs72712805	0.92[EUR][1000 genomes]
rs72712806	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72712808	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72712809	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72712819	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs729119	PYGL	trans	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16154800-16155800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:16155000-16156000	Enhancers	Fetal Muscle Leg	muscle
3	chr9:16155200-16156200	Weak transcription	Fetal Lung	lung
4	chr9:16155200-16156600	Weak transcription	Ovary	ovary
5	chr9:16155200-16157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:16155200-16159600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:16155400-16156600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:16155400-16156800	Weak transcription	Fetal Stomach	stomach
9	chr9:16155400-16157000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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