Variant report

Variant	rs56199525
Chromosome Location	chr15:49718519-49718520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12591799	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12592177	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12592296	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12594154	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12594827	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12595497	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12595701	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34635038	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3809495	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62012204	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49714000-49720400	Active TSS	Ovary	ovary
2	chr15:49714000-49720800	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr15:49714000-49721000	Active TSS	Colon Smooth Muscle	Colon
4	chr15:49714000-49722600	Active TSS	Stomach Smooth Muscle	stomach
5	chr15:49714200-49718600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49714200-49719400	Active TSS	Fetal Kidney	kidney
7	chr15:49714200-49721000	Active TSS	Rectal Smooth Muscle	rectum
8	chr15:49714200-49721000	Active TSS	Right Atrium	heart
9	chr15:49714200-49721400	Active TSS	Adipose Nuclei	Adipose
10	chr15:49714800-49720600	Active TSS	NHDF-Ad	bronchial
11	chr15:49715200-49719200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr15:49715200-49719400	Active TSS	Fetal Muscle Leg	muscle
13	chr15:49715200-49719400	Active TSS	Right Ventricle	heart
14	chr15:49715200-49719600	Active TSS	Osteobl	bone
15	chr15:49715200-49720000	Active TSS	Fetal Stomach	stomach
16	chr15:49715400-49721600	Active TSS	NHLF	lung
17	chr15:49716200-49732200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:49716400-49737200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:49716800-49720600	Weak transcription	Psoas Muscle	Psoas
20	chr15:49716800-49720600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:49716800-49720800	Weak transcription	Hela-S3	cervix
22	chr15:49716800-49722000	Weak transcription	Colonic Mucosa	Colon
23	chr15:49717000-49720400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:49717000-49721000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:49717400-49720200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:49717600-49718600	Weak transcription	Fetal Heart	heart
27	chr15:49717600-49721200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:49718000-49718600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:49718000-49719000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:49718000-49719400	Weak transcription	Fetal Lung	lung
31	chr15:49718000-49727800	Weak transcription	HSMMtube	muscle
32	chr15:49718000-49731200	Weak transcription	Left Ventricle	heart

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