Variant report

Variant	rs62012204
Chromosome Location	chr15:49749475-49749476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12591799	1.00[EUR][1000 genomes]
rs12592177	1.00[EUR][1000 genomes]
rs12592296	1.00[EUR][1000 genomes]
rs12594154	1.00[EUR][1000 genomes]
rs12594827	1.00[EUR][1000 genomes]
rs12595497	1.00[EUR][1000 genomes]
rs12595701	1.00[EUR][1000 genomes]
rs1874614	0.81[EUR][1000 genomes]
rs34635038	1.00[EUR][1000 genomes]
rs3809495	1.00[EUR][1000 genomes]
rs56199525	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv526246	chr15:49738233-49749735	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49732000-49750200	Weak transcription	HSMM	muscle
2	chr15:49737000-49751200	Weak transcription	Ovary	ovary
3	chr15:49742000-49752000	Weak transcription	Adipose Nuclei	Adipose
4	chr15:49742800-49750400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:49747200-49751400	Enhancers	NHDF-Ad	bronchial
6	chr15:49747200-49752600	Enhancers	Osteobl	bone
7	chr15:49747400-49753000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:49747600-49751400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:49748000-49750400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:49748200-49749600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:49748800-49750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:49749000-49750200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:49749000-49750200	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:49749000-49752000	Weak transcription	Fetal Heart	heart
15	chr15:49749200-49750200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:49749200-49750200	Weak transcription	NHLF	lung
17	chr15:49749200-49753600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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