Variant report

Variant	rs56205617
Chromosome Location	chr11:35344107-35344108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35343264..35345981-chr11:35357333..35358972,2	MCF-7	breast:
2	chr11:35316062..35317764-chr11:35341517..35344402,2	MCF-7	breast:
3	chr11:35342453..35346425-chr11:35381907..35387258,7	MCF-7	breast:
4	chr11:35296537..35299593-chr11:35342637..35345511,4	MCF-7	breast:
5	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
6	chr11:35296598..35298325-chr11:35342427..35345338,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11033077	0.88[EUR][1000 genomes]
rs12292906	0.88[EUR][1000 genomes]
rs16927393	0.88[EUR][1000 genomes]
rs4083482	0.96[EUR][1000 genomes]
rs7926298	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35339200-35344200	Weak transcription	Psoas Muscle	Psoas
3	chr11:35340400-35348400	Enhancers	NHDF-Ad	bronchial
4	chr11:35340600-35344800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:35340600-35345800	Enhancers	Pancreas	Pancrea
6	chr11:35340600-35347600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:35340800-35344800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:35341000-35344200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:35341200-35344400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:35341200-35351200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:35341200-35351400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:35341400-35346200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:35341400-35349400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:35341400-35350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:35341400-35351400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:35341800-35344800	Enhancers	Brain Germinal Matrix	brain
17	chr11:35342000-35346000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:35342000-35348600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:35342200-35344200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:35342200-35346400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:35342400-35347000	Enhancers	HSMM	muscle
22	chr11:35342600-35344600	Enhancers	Fetal Muscle Leg	muscle
23	chr11:35342600-35351400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:35342800-35344400	Enhancers	Brain Hippocampus Middle	brain
25	chr11:35342800-35344600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:35342800-35344800	Enhancers	Adipose Nuclei	Adipose
27	chr11:35343000-35346200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:35343000-35347000	Enhancers	HSMMtube	muscle
29	chr11:35343200-35344200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:35343200-35344200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:35343200-35344400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:35343200-35344400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:35343200-35344400	Enhancers	Fetal Brain Male	brain
34	chr11:35343200-35344400	Enhancers	Gastric	stomach
35	chr11:35343200-35344600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:35343200-35344600	Enhancers	Left Ventricle	heart
37	chr11:35343200-35344800	Enhancers	NHLF	lung
38	chr11:35343200-35345000	Enhancers	NH-A	brain
39	chr11:35343200-35347000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:35343400-35344200	Enhancers	H9 Cell Line	embryonic stem cell
41	chr11:35343400-35344200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr11:35343400-35344200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:35343400-35344200	Enhancers	Fetal Lung	lung
44	chr11:35343400-35344400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:35343400-35344400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr11:35343400-35344800	Enhancers	Placenta	Placenta
47	chr11:35343400-35344800	Enhancers	Osteobl	bone
48	chr11:35343400-35345200	Enhancers	NHEK	skin
49	chr11:35343600-35344200	Enhancers	GM12878-XiMat	blood
50	chr11:35343600-35344600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links