Variant report

Variant	rs56210620
Chromosome Location	chr7:98866511-98866512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr7:98866060-98866675	GM12878	blood:	n/a	chr7:98866222-98866233

No.	Distal block	Cell Line	Cell type
1	chr7:98738431..98740200-chr7:98866049..98867571,2	MCF-7	breast:
2	chr7:98810224..98811825-chr7:98864606..98866585,2	MCF-7	breast:
3	chr7:98739735..98741652-chr7:98866268..98868327,2	MCF-7	breast:

Variant related genes	Relation type
MYH16	TF binding region
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59709577	0.83[AFR][1000 genomes]
rs73709622	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98863800-98871800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:98864000-98866600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:98864000-98867000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:98864200-98866600	Enhancers	HepG2	liver
7	chr7:98864400-98866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:98864400-98866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:98864400-98867000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:98864400-98867400	Enhancers	HMEC	breast
11	chr7:98864400-98867400	Enhancers	NHEK	skin
12	chr7:98864600-98866800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:98864600-98867400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:98864800-98871600	Weak transcription	Gastric	stomach
15	chr7:98865000-98866600	Enhancers	HSMM	muscle
16	chr7:98865200-98866600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:98865200-98866600	Enhancers	Brain Hippocampus Middle	brain
18	chr7:98865200-98866600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
20	chr7:98865600-98866800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:98865800-98866800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:98865800-98866800	Enhancers	NH-A	brain
23	chr7:98866000-98866600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr7:98866000-98871400	Weak transcription	Hela-S3	cervix
25	chr7:98866200-98870400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:98866200-98871600	Weak transcription	NHDF-Ad	bronchial
27	chr7:98866400-98870200	Weak transcription	HUVEC	blood vessel
28	chr7:98866400-98870400	Weak transcription	Stomach Mucosa	stomach
29	chr7:98866400-98870600	Weak transcription	A549	lung
30	chr7:98866400-98871400	Weak transcription	Osteobl	bone
31	chr7:98866400-98871600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:98866400-98871600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:98866400-98871600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:98866400-98871600	Weak transcription	NHLF	lung

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