Variant report

Variant	rs73709622
Chromosome Location	chr7:98872235-98872236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98871573..98872380-chr7:98910286..98911202,3	MCF-7	breast:
2	chr7:98871870..98874406-chr7:98921503..98923594,3	MCF-7	breast:
3	chr10:112169943..112170890-chr7:98871829..98872355,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56210620	0.92[AFR][1000 genomes]
rs59709577	0.91[AFR][1000 genomes]
rs73709634	0.87[AFR][1000 genomes]
rs73709642	0.83[AFR][1000 genomes]
rs73709644	0.83[AFR][1000 genomes]
rs73709646	0.83[AFR][1000 genomes]
rs73710440	0.83[AFR][1000 genomes]
rs73710446	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98860600-98892800	Weak transcription	Right Atrium	heart
2	chr7:98865400-98899200	Weak transcription	Spleen	Spleen
3	chr7:98866600-98874400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:98866600-98874400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:98869800-98873200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:98870200-98872400	Enhancers	HUVEC	blood vessel
7	chr7:98870400-98873200	Enhancers	Stomach Mucosa	stomach
8	chr7:98871400-98872400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr7:98871600-98872400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:98871600-98872400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:98871600-98872600	Enhancers	Fetal Intestine Large	intestine
12	chr7:98872000-98872400	Active TSS	HepG2	liver
13	chr7:98872000-98873400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:98872000-98875000	Weak transcription	Gastric	stomach
15	chr7:98872200-98872400	Enhancers	A549	lung
16	chr7:98872200-98872400	Active TSS	Hela-S3	cervix
17	chr7:98872200-98873000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:98872200-98873000	Enhancers	NHEK	skin
19	chr7:98872200-98873200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:98872200-98873400	Enhancers	HMEC	breast
21	chr7:98872200-98874200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:98872200-98874200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:98872200-98874800	Weak transcription	Placenta Amnion	Placenta Amnion

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