Variant report

Variant	rs56216041
Chromosome Location	chr6:163669218-163669219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10214583	1.00[EUR][1000 genomes]
rs58829423	1.00[EUR][1000 genomes]
rs58858933	1.00[EUR][1000 genomes]
rs60020523	1.00[EUR][1000 genomes]
rs61181974	1.00[EUR][1000 genomes]
rs6901770	1.00[EUR][1000 genomes]
rs6903043	1.00[EUR][1000 genomes]
rs6915979	1.00[EUR][1000 genomes]
rs6929615	1.00[EUR][1000 genomes]
rs73784512	1.00[EUR][1000 genomes]
rs7742100	1.00[EUR][1000 genomes]
rs7766922	1.00[EUR][1000 genomes]
rs7768185	1.00[EUR][1000 genomes]
rs9295210	1.00[EUR][1000 genomes]
rs9456836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163660000-163673200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163661000-163671400	Enhancers	Brain Hippocampus Middle	brain
3	chr6:163661600-163670400	Weak transcription	Right Atrium	heart
4	chr6:163661600-163670600	Enhancers	Brain Substantia Nigra	brain
5	chr6:163661800-163671800	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:163662000-163673000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:163663000-163675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:163664800-163670600	Weak transcription	Left Ventricle	heart
9	chr6:163665600-163670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:163665600-163670600	Weak transcription	Right Ventricle	heart
11	chr6:163665800-163675000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:163666800-163670400	Enhancers	Brain Anterior Caudate	brain
13	chr6:163667400-163670000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:163667400-163670000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:163667600-163669600	Enhancers	Brain Germinal Matrix	brain
16	chr6:163667600-163671400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:163667600-163671400	Enhancers	Brain Angular Gyrus	brain
18	chr6:163667800-163669400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:163668000-163670200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:163668600-163669400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:163668600-163669400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:163668800-163673000	Weak transcription	Fetal Heart	heart
23	chr6:163669000-163669400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:163669000-163669800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:163669000-163670800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:163669000-163671000	Enhancers	HSMMtube	muscle
27	chr6:163669000-163671400	Enhancers	HSMM	muscle
28	chr6:163669000-163671600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:163669200-163670400	Weak transcription	Brain Inferior Temporal Lobe	brain

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