Variant report

Variant	rs7768185
Chromosome Location	chr6:163600477-163600478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163599149..163600758-chr6:163603765..163606132,2	K562	blood:
2	chr6:163598294..163600758-chr6:163603765..163605497,2	K562	blood:
3	chr6:163592475..163596372-chr6:163597082..163601773,5	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10214583	1.00[EUR][1000 genomes]
rs56216041	1.00[EUR][1000 genomes]
rs58829423	1.00[EUR][1000 genomes]
rs58858933	1.00[EUR][1000 genomes]
rs60020523	1.00[EUR][1000 genomes]
rs61181974	1.00[EUR][1000 genomes]
rs6901770	1.00[EUR][1000 genomes]
rs6903043	1.00[EUR][1000 genomes]
rs6915979	1.00[EUR][1000 genomes]
rs6929615	1.00[EUR][1000 genomes]
rs73784512	1.00[EUR][1000 genomes]
rs7742100	1.00[EUR][1000 genomes]
rs7766922	1.00[EUR][1000 genomes]
rs9295210	1.00[EUR][1000 genomes]
rs9456836	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163591800-163602000	Weak transcription	Placenta	Placenta
2	chr6:163594400-163602000	Enhancers	Brain Hippocampus Middle	brain
3	chr6:163595000-163602000	Weak transcription	Left Ventricle	heart
4	chr6:163596800-163602800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:163597000-163602000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:163597800-163602000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:163597800-163602200	Enhancers	Brain Anterior Caudate	brain
8	chr6:163598200-163602000	Weak transcription	Psoas Muscle	Psoas
9	chr6:163598200-163602000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:163598400-163601800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:163598400-163602000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:163598400-163602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:163598400-163602000	Weak transcription	Fetal Heart	heart
14	chr6:163598400-163602400	Enhancers	Brain Substantia Nigra	brain
15	chr6:163598400-163606600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:163598600-163600800	Weak transcription	Brain Angular Gyrus	brain
17	chr6:163598600-163602000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:163599000-163602200	Weak transcription	Right Atrium	heart
19	chr6:163599200-163600800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:163599200-163605600	Weak transcription	Brain Germinal Matrix	brain
21	chr6:163599400-163600800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:163599400-163602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:163599400-163602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:163599400-163602000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:163600000-163602200	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:163600200-163602800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:163600400-163600800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:163600400-163601000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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