Variant report

Variant	rs562168858
Chromosome Location	chr1:211057729-211057730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211055200-211058400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:211055600-211057800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:211055600-211058200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:211055600-211058200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:211056000-211057800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:211056200-211058400	Enhancers	HSMMtube	muscle
7	chr1:211056600-211057800	Enhancers	Brain Anterior Caudate	brain
8	chr1:211056600-211057800	Enhancers	A549	lung
9	chr1:211056800-211057800	Enhancers	Osteobl	bone
10	chr1:211056800-211058000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:211056800-211058000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:211056800-211058000	Enhancers	NH-A	brain
13	chr1:211056800-211058600	Genic enhancers	HSMM	muscle
14	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:211057000-211057800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:211057000-211058000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:211057400-211058200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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