Variant report

Variant	rs56218122
Chromosome Location	chr2:11211959-11211960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10439250	0.88[ASN][1000 genomes]
rs2056101	0.86[ASN][1000 genomes]
rs2056102	0.86[ASN][1000 genomes]
rs2100369	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2357891	0.94[ASN][1000 genomes]
rs4669684	0.94[ASN][1000 genomes]
rs56362503	0.88[ASN][1000 genomes]
rs6720704	0.91[EUR][1000 genomes]
rs730990	0.88[ASN][1000 genomes]
rs7577930	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11206400-11213400	Weak transcription	Fetal Lung	lung
2	chr2:11206600-11212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:11207800-11214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:11209200-11213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11210400-11213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:11211200-11212000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:11211200-11213400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:11211200-11213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:11211400-11212200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:11211400-11212400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:11211400-11213400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:11211400-11213600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr2:11211400-11213800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:11211400-11214000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:11211400-11214000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:11211600-11212600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:11211600-11214400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:11211800-11213200	Weak transcription	Osteobl	bone
19	chr2:11211800-11213800	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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