Variant report

Variant	rs56362503
Chromosome Location	chr2:11211477-11211478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11207479..11209731-chr2:11210577..11212814,2	K562	blood:
2	chr2:11162921..11164453-chr2:11209182..11211936,2	MCF-7	breast:
3	chr2:11095672..11098504-chr2:11211086..11213871,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10194167	0.83[ASN][1000 genomes]
rs10439250	0.97[ASN][1000 genomes]
rs16857111	0.91[ASN][1000 genomes]
rs2056101	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2056102	0.99[ASN][1000 genomes]
rs2357891	0.82[ASN][1000 genomes]
rs4669684	0.82[ASN][1000 genomes]
rs56218122	0.88[ASN][1000 genomes]
rs72783448	0.90[ASN][1000 genomes]
rs730990	1.00[ASN][1000 genomes]
rs7577930	1.00[ASN][1000 genomes]
rs7586836	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11206400-11213400	Weak transcription	Fetal Lung	lung
2	chr2:11206600-11212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:11207800-11214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:11209200-11213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11210400-11213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:11211200-11211800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:11211200-11211800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:11211200-11212000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:11211200-11213400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:11211200-11213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:11211400-11211600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:11211400-11211600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:11211400-11211600	Enhancers	Osteobl	bone
14	chr2:11211400-11211800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr2:11211400-11211800	Bivalent Enhancer	Fetal Intestine Small	intestine
16	chr2:11211400-11211800	Enhancers	Fetal Muscle Leg	muscle
17	chr2:11211400-11212200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr2:11211400-11212400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr2:11211400-11213400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:11211400-11213600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr2:11211400-11213800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:11211400-11214000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr2:11211400-11214000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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