Variant report

Variant	rs56219641
Chromosome Location	chr16:82807019-82807020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSD17B2-2	chr16:82806924-82807094	ENSG00000260862.1

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11646849	0.82[ASN][1000 genomes]
rs12597383	0.85[ASN][1000 genomes]
rs12920400	0.85[ASN][1000 genomes]
rs12924560	0.81[ASN][1000 genomes]
rs12925326	0.84[ASN][1000 genomes]
rs12932553	0.84[ASN][1000 genomes]
rs1350891	0.88[ASN][1000 genomes]
rs16958619	0.84[ASN][1000 genomes]
rs2126371	0.87[ASN][1000 genomes]
rs34271157	0.81[ASN][1000 genomes]
rs35518553	0.81[ASN][1000 genomes]
rs67501551	0.85[ASN][1000 genomes]
rs7184763	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1067216	chr16:82719694-82821762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv543000	chr16:82719694-82821762	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv907026	chr16:82765607-82812853	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1066132	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv543001	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1063412	chr16:82806653-82826507	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82790200-82810400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:82793000-82815200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:82795800-82810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:82796400-82810000	Weak transcription	HUVEC	blood vessel
5	chr16:82802000-82810400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82803000-82807200	Enhancers	Left Ventricle	heart
7	chr16:82803800-82815600	Weak transcription	HSMM	muscle
8	chr16:82804400-82816600	Weak transcription	Brain Hippocampus Middle	brain
9	chr16:82805000-82811800	Enhancers	Primary B cells from peripheral blood	blood
10	chr16:82805400-82807200	Enhancers	HMEC	breast
11	chr16:82805600-82821600	Weak transcription	NHEK	skin
12	chr16:82805800-82807200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:82806000-82807200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr16:82806000-82807200	Enhancers	Brain Angular Gyrus	brain
15	chr16:82806000-82813800	Weak transcription	Fetal Muscle Leg	muscle
16	chr16:82806200-82807200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:82806200-82811000	Weak transcription	Psoas Muscle	Psoas
18	chr16:82806200-82812800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr16:82806400-82807200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:82806400-82807200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr16:82806600-82807200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr16:82806800-82807200	Enhancers	NH-A	brain
23	chr16:82806800-82807400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr16:82806800-82813000	Weak transcription	Aorta	Aorta
25	chr16:82806800-82813000	Weak transcription	Right Ventricle	heart
26	chr16:82806800-82816200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr16:82807000-82815400	Weak transcription	HSMMtube	muscle

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