Variant report

Variant	rs56220011
Chromosome Location	chr6:145805774-145805775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13206047	0.84[EUR][1000 genomes]
rs55646460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56931754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58271163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570686	0.95[EUR][1000 genomes]
rs6905046	0.95[EUR][1000 genomes]
rs6910793	1.00[EUR][1000 genomes]
rs6916625	1.00[EUR][1000 genomes]
rs73560904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781819	1.00[EUR][1000 genomes]
rs7738882	1.00[EUR][1000 genomes]
rs7741505	0.95[EUR][1000 genomes]
rs7757254	0.85[EUR][1000 genomes]
rs9497313	0.95[EUR][1000 genomes]
rs9497314	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv520619	chr6:145800915-145807907	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv2763962	chr6:145802158-145817051	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145803800-145806000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:145805000-145805800	Enhancers	HMEC	breast
3	chr6:145805200-145806400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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