Variant report

Variant	rs58271163
Chromosome Location	chr6:145785650-145785651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13206047	0.84[EUR][1000 genomes]
rs55646460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56220011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56931754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570686	0.95[EUR][1000 genomes]
rs6905046	0.95[EUR][1000 genomes]
rs6910793	1.00[EUR][1000 genomes]
rs6916625	1.00[EUR][1000 genomes]
rs73560904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73781819	1.00[EUR][1000 genomes]
rs7738882	1.00[EUR][1000 genomes]
rs7741505	0.95[EUR][1000 genomes]
rs7757254	0.85[EUR][1000 genomes]
rs9497313	0.95[EUR][1000 genomes]
rs9497314	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145768200-145803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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