Variant report

Variant	rs562244322
Chromosome Location	chr20:24562425-24562426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:24562407-24562468	MCF-7	breast:	n/a	n/a
2	ZNF263	chr20:24562115-24563164	HEK293-T-REx	kidney:	n/a	chr20:24562466-24562487
3	POLR2A	chr20:24562415-24562512	MCF-7	breast:	n/a	n/a
4	MYC	chr20:24562389-24562564	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
SYNDIG1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv990034	chr20:24562298-24563174	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24549800-24565800	Weak transcription	Thymus	Thymus
3	chr20:24553800-24564800	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24554000-24564800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:24555800-24564000	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:24559800-24563200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:24559800-24564000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr20:24560800-24564800	Weak transcription	Brain Angular Gyrus	brain
9	chr20:24560800-24565000	Weak transcription	Fetal Muscle Leg	muscle
10	chr20:24561000-24565000	Weak transcription	Brain Substantia Nigra	brain
11	chr20:24561800-24562800	Weak transcription	Fetal Brain Male	brain
12	chr20:24561800-24565000	Weak transcription	Brain Germinal Matrix	brain
13	chr20:24562000-24562600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr20:24562200-24562600	Enhancers	Esophagus	oesophagus
15	chr20:24562200-24562800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr20:24562200-24563000	Enhancers	Right Ventricle	heart
17	chr20:24562400-24562600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24562400-24562600	Enhancers	Spleen	Spleen
19	chr20:24562400-24562800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr20:24562400-24563000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:24562400-24567400	Weak transcription	Fetal Brain Female	brain

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