Variant report

Variant	rs562264421
Chromosome Location	chr21:40112436-40112437
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:40110884..40114912-chr21:40179006..40181984,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157557	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060405	chr21:40095523-40159813	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1057356	chr21:40103881-40147363	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv913739	chr21:40103951-40152372	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv913740	chr21:40103951-40157124	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3410139	chr21:40111732-40113680	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40102600-40124800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:40106600-40112800	Weak transcription	Colonic Mucosa	Colon
3	chr21:40107000-40113000	Weak transcription	Primary T cells from cord blood	blood
4	chr21:40107400-40113000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:40108000-40113200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr21:40108400-40113000	Weak transcription	Dnd41	blood
7	chr21:40111600-40113600	Enhancers	Small Intestine	intestine
8	chr21:40111600-40116200	Enhancers	Fetal Intestine Large	intestine
9	chr21:40111600-40116400	Enhancers	Fetal Intestine Small	intestine
10	chr21:40111800-40114200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr21:40111800-40114200	Enhancers	Duodenum Mucosa	Duodenum
12	chr21:40112000-40112600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr21:40112000-40114000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr21:40112000-40114400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr21:40112000-40115000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr21:40112200-40113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr21:40112200-40113200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr21:40112200-40113200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr21:40112200-40113400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr21:40112200-40113600	Weak transcription	HepG2	liver
21	chr21:40112200-40114000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr21:40112200-40115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr21:40112400-40112600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr21:40112400-40112800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr21:40112400-40112800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr21:40112400-40113400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr21:40112400-40114400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links