Variant report

Variant	rs562362898
Chromosome Location	chr17:15495510-15495511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1067123	chr17:15482503-15557728	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv960420	chr17:15495503-15527069	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15491600-15501800	Weak transcription	Esophagus	oesophagus
2	chr17:15492200-15497000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:15492200-15497000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr17:15492400-15495600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr17:15492800-15496400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:15493000-15501000	Weak transcription	A549	lung
7	chr17:15493600-15495600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:15493600-15497200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr17:15493800-15495600	Enhancers	Primary hematopoietic stem cells	blood
10	chr17:15494000-15495600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:15494000-15495600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:15494200-15496800	Enhancers	Fetal Thymus	thymus
13	chr17:15494200-15497800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr17:15494800-15496600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:15495000-15495800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:15495000-15496200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:15495200-15495600	Enhancers	Fetal Kidney	kidney
18	chr17:15495200-15495600	Enhancers	HUVEC	blood vessel
19	chr17:15495200-15495800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr17:15495200-15496200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr17:15495200-15511200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:15495400-15495600	Enhancers	Primary T cells from cord blood	blood
23	chr17:15495400-15495600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
24	chr17:15495400-15498400	Weak transcription	Psoas Muscle	Psoas

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