Variant report

Variant	rs56238848
Chromosome Location	chr15:31644493-31644494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31643860..31648950-chr15:31650672..31654273,5	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11855192	0.83[AMR][1000 genomes]
rs1989684	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61548777	0.85[AFR][1000 genomes]
rs74010618	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74010619	0.83[AMR][1000 genomes]
rs74010621	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
15	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv1052942	chr15:31624164-31653633	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
19	nsv1051910	chr15:31641254-31672921	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31622800-31657400	Enhancers	Right Atrium	heart
2	chr15:31625200-31649000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:31631400-31645000	Enhancers	Brain Substantia Nigra	brain
4	chr15:31631600-31644600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:31634400-31644600	Enhancers	Brain Hippocampus Middle	brain
6	chr15:31635600-31644600	Weak transcription	Fetal Lung	lung
7	chr15:31637400-31644800	Genic enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:31637800-31644600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:31638000-31644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:31638000-31644800	Weak transcription	Hela-S3	cervix
11	chr15:31638200-31644600	Weak transcription	Aorta	Aorta
12	chr15:31638400-31655400	Enhancers	Psoas Muscle	Psoas
13	chr15:31639000-31646000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:31639400-31644800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:31639400-31644800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:31639600-31644600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:31639600-31644600	Genic enhancers	Fetal Thymus	thymus
18	chr15:31639600-31644800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:31639800-31645000	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr15:31640400-31644600	Enhancers	Brain Anterior Caudate	brain
21	chr15:31640400-31644800	Genic enhancers	Primary B cells from cord blood	blood
22	chr15:31640600-31646600	Enhancers	Esophagus	oesophagus
23	chr15:31640800-31645200	Enhancers	Right Ventricle	heart
24	chr15:31641000-31644600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:31641000-31645400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:31641000-31655600	Enhancers	Left Ventricle	heart
27	chr15:31641200-31644600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr15:31641200-31658400	Enhancers	Liver	Liver
29	chr15:31641400-31645000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:31641600-31644600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:31641600-31644800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr15:31641600-31646000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:31641800-31644600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr15:31641800-31644800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:31641800-31645000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:31641800-31647000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:31641800-31648400	Enhancers	Small Intestine	intestine
38	chr15:31642000-31644800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:31642000-31646400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr15:31642000-31646600	Enhancers	Pancreas	Pancrea
41	chr15:31642200-31647400	Enhancers	Fetal Muscle Leg	muscle
42	chr15:31642400-31645200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:31642600-31646000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:31642600-31646000	Enhancers	Fetal Heart	heart
45	chr15:31642600-31646400	Enhancers	HMEC	breast
46	chr15:31642600-31646600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:31642600-31646800	Enhancers	Stomach Mucosa	stomach
48	chr15:31642800-31644800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr15:31642800-31646400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:31643000-31644600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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