Variant report

Variant	rs56239234
Chromosome Location	chr19:23869538-23869539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:254)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:254 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:23869480-23869630	MCF-7	breast:	n/a	n/a
2	POLR2A	chr19:23869440-23870264	GM12891	blood:	n/a	n/a
3	SIN3AK20	chr19:23869260-23870308	MCF-7	breast:	n/a	n/a
4	POLR2A	chr19:23869465-23870269	PFSK-1	brain:	n/a	n/a
5	TAF1	chr19:23869459-23870158	Hela-S3	cervix:	n/a	n/a
6	TAF1	chr19:23869427-23870282	K562	blood:	n/a	n/a
7	BHLHE40	chr19:23869241-23870197	GM12878	blood:	n/a	n/a
8	TAF1	chr19:23869506-23870183	GM12891	blood:	n/a	n/a
9	CTCF	chr19:23869480-23869630	AoAF	blood vessel:	n/a	n/a
10	CTCF	chr19:23869500-23869650	HPAF	blood vessel:	n/a	n/a
11	POLR2A	chr19:23869448-23870171	HepG2	liver:	n/a	n/a
12	CTCF	chr19:23869460-23869610	HMEC	breast:	n/a	n/a
13	CTCF	chr19:23869480-23869630	GM12864	blood:	n/a	n/a
14	ZNF143	chr19:23869396-23870186	GM12878	blood:	n/a	chr19:23869987-23870005
15	MAX	chr19:23869357-23870230	K562	blood:	n/a	n/a
16	POLR2A	chr19:23869425-23870274	K562	blood:	n/a	n/a
17	PML	chr19:23869340-23870231	GM12878	blood:	n/a	n/a
18	RUNX3	chr19:23869364-23870128	GM12878	blood:	n/a	n/a
19	POLR2A	chr19:23869496-23870300	GM12878	blood:	n/a	n/a
20	POLR2A	chr19:23869493-23870306	K562	blood:	n/a	n/a
21	CTCF	chr19:23869440-23869590	SAEC	small airway:	n/a	n/a
22	POLR2A	chr19:23869359-23870329	K562	blood:	n/a	n/a
23	CHD2	chr19:23869396-23870197	GM12878	blood:	n/a	chr19:23869980-23869987
24	MYC	chr19:23869352-23870294	K562	blood:	n/a	n/a
25	TCF7L2	chr19:23869397-23870308	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr19:23869440-23869590	HEK293	kidney:	n/a	n/a
27	ZNF143	chr19:23869482-23869676	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr19:23869305-23870211	Hela-S3	cervix:	n/a	n/a
29	HMGN3	chr19:23869504-23870193	K562	blood:	n/a	chr19:23869506-23869515
30	POLR2A	chr19:23869339-23870339	GM12891	blood:	n/a	n/a
31	POLR2A	chr19:23869379-23870255	HL-60	blood:	n/a	n/a
32	POLR2A	chr19:23869308-23870230	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr19:23869416-23870205	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr19:23869425-23870238	GM18951	blood:	n/a	n/a
35	REST	chr19:23869084-23870622	H1-neurons	neurons:	n/a	n/a
36	CTCF	chr19:23869460-23869610	GM12864	blood:	n/a	n/a
37	CTCF	chr19:23869420-23869570	GM12871	blood:	n/a	n/a
38	YY1	chr19:23869353-23870222	A549	lung:	n/a	chr19:23870003-23870011 chr19:23869668-23869676 chr19:23869667-23869689 chr19:23870000-23870022 chr19:23869667-23869677 chr19:23869998-23870017
39	CTCF	chr19:23869529-23869605	GM12878	blood:	n/a	n/a
40	CTCF	chr19:23869520-23869670	Caco-2	colon:	n/a	n/a
41	TBL1XR1	chr19:23869497-23870188	K562	blood:	n/a	n/a
42	POLR2A	chr19:23869414-23870297	GM19193	blood:	n/a	n/a
43	CTCF	chr19:23869491-23869619	LNCaP	prostate:	n/a	n/a
44	CTCF	chr19:23869440-23869590	AG09309	skin:	n/a	n/a
45	RUNX3	chr19:23869341-23870068	GM12878	blood:	n/a	n/a
46	CTCF	chr19:23869420-23869570	AG04449	skin:	n/a	n/a
47	TAF1	chr19:23869343-23870269	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr19:23869405-23870289	GM12892	blood:	n/a	n/a
49	MAZ	chr19:23869534-23870125	GM12878	blood:	n/a	n/a
50	RFX5	chr19:23869406-23870309	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:23869502-23869552	HUVEC	blood vessel:	n/a
2	chr19:23869502-23869552	T-47D	breast:	n/a
3	chr19:23869502-23869552	HMEC	breast:	n/a
4	chr19:23869502-23869552	LNCaP	prostate:	n/a
5	chr19:23869502-23869552	PFSK-1	brain:	n/a
6	chr19:23869502-23869552	GM19239	blood:	n/a
7	chr19:23869502-23869552	BJ	skin:	n/a
8	chr19:23869502-23869552	HCM	heart:	n/a
9	chr19:23869502-23869552	HCPEpiC	choroid plexus:	n/a
10	chr19:23869502-23869552	HIPEpiC	eye:	n/a
11	chr19:23869502-23869552	SAEC	small airway:	n/a
12	chr19:23869502-23869552	K562	blood:	n/a
13	chr19:23869502-23869552	H1-hESC	embryonic stem cell:	embryo
14	chr19:23869502-23869552	Jurkat	blood:	n/a
15	chr19:23869502-23869552	HRE	kidney:	n/a
16	chr19:23869502-23869552	PrEC	prostate:	n/a
17	chr19:23869502-23869552	ECC-1	luminal epithelium:	n/a
18	chr19:23869502-23869552	AG09319	gingival:	n/a
19	chr19:23869502-23869552	MCF-7	breast:	n/a
20	chr19:23869502-23869552	GM12878	blood:	n/a
21	chr19:23869502-23869552	AG10803	skin:	n/a
22	chr19:23869502-23869552	SK-N-SH	brain:	n/a
23	chr19:23869502-23869552	Hela-S3	cervix:	n/a
24	chr19:23869502-23869552	NT2-D1	testis:	n/a
25	chr19:23869502-23869552	Hepatocyte	liver:	n/a
26	chr19:23869502-23869552	BE2_C	brain:	n/a
27	chr19:23869502-23869552	ovcar-3	ovarian:	n/a
28	chr19:23869502-23869552	AG04450	lung:	fetal
29	chr19:23869502-23869552	GM12891	blood:	n/a
30	chr19:23869502-23869552	U87	brain:	n/a
31	chr19:23869502-23869552	HAEpiC	amniotic membrane:	n/a
32	chr19:23869502-23869552	HRPEpiC	eye:	n/a
33	chr19:23869502-23869552	Caco-2	colon:	n/a
34	chr19:23869502-23869552	NHBE	bronchial:	n/a
35	chr19:23869502-23869552	HCF	heart:	n/a
36	chr19:23869502-23869552	SKMC	muscle:	n/a
37	chr19:23869502-23869552	ProgFib	skin:	n/a
38	chr19:23869502-23869552	IMR90	lung:	fetal
39	chr19:23869502-23869552	PANC-1	pancreas:	n/a
40	chr19:23869502-23869552	MCF10A-Er-Src	breast:	n/a
41	chr19:23869502-23869552	SK-N-MC	brain:	n/a
42	chr19:23869502-23869552	HCT-116	colon:	n/a
43	chr19:23869502-23869552	GM06990	blood:	n/a
44	chr19:23869502-23869552	AG04449	skin:	fetal
45	chr19:23869502-23869552	HL-60	blood:	n/a
46	chr19:23869502-23869552	CMK	blood:	n/a
47	chr19:23869502-23869552	HRCEpiC	kidney:	n/a
48	chr19:23869502-23869552	AG09309	skin:	n/a
49	chr19:23869502-23869552	HEEpiC	esophagus:	n/a
50	chr19:23869502-23869552	AoSMC	blood vessel:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:23576348..23579660-chr19:23867719..23870587,3	MCF-7	breast:
2	chr1:149223531..149224409-chr19:23869533..23870076,2	NB4	blood:

No data

Variant related genes	Relation type
ZNF675	TF binding region
ZNF675	CpG island
ENSG00000167232	Chromatin interaction
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10469381	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11085589	0.81[ASN][1000 genomes]
rs11085596	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11667210	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11671053	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11672109	0.84[ASN][1000 genomes]
rs11881582	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11882505	0.84[ASN][1000 genomes]
rs11882610	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12971879	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12974172	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12975888	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12977435	0.80[AFR][1000 genomes]
rs2364618	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2364628	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35080831	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4500884	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56022578	0.82[AFR][1000 genomes]
rs7257283	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7257569	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7259167	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8109636	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758491	chr19:23071299-23940467	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
2	nsv1057958	chr19:23596756-24159379	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv543963	chr19:23596756-24159379	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv931052	chr19:23610462-24133074	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv1063705	chr19:23611683-24144829	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv579047	chr19:23620632-24069443	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1058624	chr19:23620762-24071522	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv543964	chr19:23620762-24071522	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1059279	chr19:23620873-24071154	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv949038	chr19:23621540-24059150	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv1061876	chr19:23621540-24071154	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
12	nsv529080	chr19:23624528-24311535	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	nsv1057985	chr19:23624727-24133075	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv543965	chr19:23624727-24133075	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
15	nsv817490	chr19:23624728-24061026	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	nsv530395	chr19:23624728-24133074	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	nsv497922	chr19:23624807-24043127	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv1063538	chr19:23671507-24561180	Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
19	nsv579048	chr19:23671926-24060980	Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv579049	chr19:23671926-24061144	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv1056409	chr19:23677992-23971667	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv911465	chr19:23696257-23901285	Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv579050	chr19:23708666-24071154	Weak transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
24	nsv911466	chr19:23713466-23983297	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	nsv1065058	chr19:23724151-24503722	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
26	nsv993561	chr19:23731992-24378493	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
27	nsv524183	chr19:23742358-24490299	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
28	nsv432042	chr19:23743106-23961781	ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
29	nsv911470	chr19:23746247-23930879	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
30	nsv458528	chr19:23776033-23938402	Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
31	nsv579051	chr19:23776033-23938402	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
32	nsv1061720	chr19:23793205-24029686	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
33	nsv1064936	chr19:23793205-24060185	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
34	esv1792023	chr19:23793270-23919307	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
35	esv1794088	chr19:23806211-23930879	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
36	esv1792447	chr19:23806260-23919307	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
37	nsv533257	chr19:23812263-24366074	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
38	nsv1063173	chr19:23821984-24521623	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
39	nsv1063965	chr19:23827708-24029686	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv1056903	chr19:23827708-24503722	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
41	nsv1066151	chr19:23830504-24561180	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
42	nsv963033	chr19:23840611-23890898	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
43	nsv916400	chr19:23848713-24378493	Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
44	nsv498117	chr19:23868453-24376393	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23868000-23870200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr19:23868200-23870000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr19:23868200-23870200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr19:23868200-23870200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr19:23868200-23870200	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr19:23868400-23869600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:23868400-23870000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr19:23868400-23870000	Active TSS	GM12878-XiMat	blood
9	chr19:23868400-23870200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:23868400-23870200	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr19:23868400-23870200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:23868400-23870200	Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr19:23868400-23870200	Active TSS	Rectal Smooth Muscle	rectum
14	chr19:23868400-23870200	Active TSS	HMEC	breast
15	chr19:23868400-23870200	Active TSS	HSMMtube	muscle
16	chr19:23868400-23870200	Active TSS	K562	blood
17	chr19:23868400-23870200	Active TSS	Monocytes-CD14+_RO01746	blood
18	chr19:23868400-23870400	Active TSS	Fetal Brain Female	brain
19	chr19:23868600-23870000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr19:23868600-23870000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:23868600-23870000	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr19:23868600-23870000	Active TSS	NHLF	lung
23	chr19:23868600-23870200	Active TSS	H9 Cell Line	embryonic stem cell
24	chr19:23868600-23870200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:23868600-23870200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:23868600-23870200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr19:23868600-23870200	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr19:23868600-23870200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr19:23868600-23870200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr19:23868600-23870200	Active TSS	Brain Anterior Caudate	brain
31	chr19:23868600-23870200	Active TSS	Brain Hippocampus Middle	brain
32	chr19:23868600-23870200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:23868600-23870200	Active TSS	Fetal Kidney	kidney
34	chr19:23868600-23870200	Active TSS	Ovary	ovary
35	chr19:23868600-23870200	Active TSS	HSMM	muscle
36	chr19:23868600-23870200	Active TSS	NH-A	brain
37	chr19:23868600-23870200	Active TSS	NHDF-Ad	bronchial
38	chr19:23868600-23870400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr19:23868600-23870400	Active TSS	Stomach Smooth Muscle	stomach
40	chr19:23868800-23870000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr19:23868800-23870000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr19:23868800-23870000	Active TSS	Liver	Liver
43	chr19:23868800-23870000	Active TSS	Fetal Brain Male	brain
44	chr19:23868800-23870200	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr19:23868800-23870200	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr19:23868800-23870200	Active TSS	Muscle Satellite Cultured Cells	--
47	chr19:23868800-23870200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:23868800-23870200	Active TSS	Brain Angular Gyrus	brain
49	chr19:23868800-23870200	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr19:23868800-23870200	Active TSS	Duodenum Smooth Muscle	Duodenum

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