Variant report

Variant	rs56249745
Chromosome Location	chr8:66888594-66888595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66886102..66888968-chr8:66894531..66896379,2	MCF-7	breast:
2	chr8:66888349..66890452-chr8:66932812..66934820,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147570	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10092435	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10097206	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10097560	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10098417	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10104877	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11984566	0.88[ASN][1000 genomes]
rs11984618	0.88[ASN][1000 genomes]
rs11986470	0.88[ASN][1000 genomes]
rs11988360	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11988712	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11995587	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11995702	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11995704	0.97[ASN][1000 genomes]
rs11996694	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11996764	0.85[ASN][1000 genomes]
rs11997658	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11998618	0.85[ASN][1000 genomes]
rs11998640	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12114319	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16932411	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357552	0.85[ASN][1000 genomes]
rs2357566	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2357568	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2357569	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2357577	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2357579	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2357657	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2357663	0.88[ASN][1000 genomes]
rs28402886	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28605672	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2884235	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34653832	0.85[ASN][1000 genomes]
rs3934466	0.88[ASN][1000 genomes]
rs4262311	0.95[ASN][1000 genomes]
rs4317552	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4355757	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4380924	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4601292	0.88[ASN][1000 genomes]
rs4637811	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs55861240	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55864718	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56389721	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59282311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60020249	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60258162	0.88[ASN][1000 genomes]
rs60520895	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60667481	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61709988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472236	0.88[ASN][1000 genomes]
rs6472238	0.88[ASN][1000 genomes]
rs6472241	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6472242	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6981354	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6982577	0.97[ASN][1000 genomes]
rs6983945	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6985149	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989099	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989850	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6990319	0.85[ASN][1000 genomes]
rs6992002	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6994725	0.88[ASN][1000 genomes]
rs6996761	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6997496	0.88[ASN][1000 genomes]
rs7000670	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003160	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7006789	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7010113	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010679	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7012332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017618	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7461470	0.82[ASN][1000 genomes]
rs7465415	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7812954	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7817474	0.88[ASN][1000 genomes]
rs7841181	0.88[ASN][1000 genomes]
rs9694378	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9918852	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66873800-66890600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr8:66878800-66893600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:66884800-66888800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr8:66885400-66890000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:66886600-66892600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:66886600-66893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:66887200-66893600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:66887400-66893400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr8:66887400-66893600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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