Variant report

Variant	rs2357657
Chromosome Location	chr8:66936490-66936491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66934410..66936922-chr8:66937926..66940879,2	K562	blood:
2	chr8:66752746..66756404-chr8:66931747..66936511,11	MCF-7	breast:
3	chr8:66752587..66755352-chr8:66933051..66936501,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10092435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097206	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10097560	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104877	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984566	0.85[ASN][1000 genomes]
rs11984618	0.85[ASN][1000 genomes]
rs11986470	0.85[ASN][1000 genomes]
rs11988360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988712	0.82[ASN][1000 genomes]
rs11991974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11995587	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995702	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995704	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996694	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11996764	0.82[ASN][1000 genomes]
rs11997658	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998618	0.82[ASN][1000 genomes]
rs11998640	0.95[ASN][1000 genomes]
rs12114319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932411	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357552	0.82[ASN][1000 genomes]
rs2357566	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357568	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357569	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357577	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2357579	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357663	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2357666	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs28402886	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605672	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34653832	0.82[ASN][1000 genomes]
rs3934466	0.85[ASN][1000 genomes]
rs4262311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4317552	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4355757	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380924	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4601292	0.85[ASN][1000 genomes]
rs4637811	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55861240	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55864718	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56249745	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56389721	0.82[ASN][1000 genomes]
rs59282311	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60020249	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60258162	0.85[ASN][1000 genomes]
rs60520895	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60667481	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61709988	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6472236	0.85[ASN][1000 genomes]
rs6472238	0.85[ASN][1000 genomes]
rs6472241	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6472242	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6981354	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982577	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985149	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989099	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989850	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6990209	0.84[EUR][1000 genomes]
rs6990319	0.82[ASN][1000 genomes]
rs6992002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994725	0.85[ASN][1000 genomes]
rs6996761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7000670	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7002734	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7003160	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010113	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012332	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7017618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465415	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812954	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7817474	0.85[ASN][1000 genomes]
rs7821284	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7841181	0.85[ASN][1000 genomes]
rs9694378	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9918852	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3395265	chr8:66936048-66939146	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66931000-66938800	Weak transcription	Spleen	Spleen
2	chr8:66931600-66938800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:66933800-66936600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr8:66933800-66938600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:66933800-66944400	Weak transcription	Pancreas	Pancrea
6	chr8:66934000-66943800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:66934000-66944400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:66934600-66938800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:66934600-66939200	Weak transcription	Psoas Muscle	Psoas
10	chr8:66934800-66937000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:66934800-66938600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:66934800-66938600	Weak transcription	Thymus	Thymus
13	chr8:66934800-66938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:66934800-66938800	Weak transcription	Esophagus	oesophagus
15	chr8:66934800-66938800	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:66934800-66938800	Weak transcription	Gastric	stomach
17	chr8:66934800-66938800	Weak transcription	Right Atrium	heart
18	chr8:66934800-66940800	Weak transcription	Lung	lung
19	chr8:66935000-66938600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:66935000-66938600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:66935000-66938600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:66935000-66938600	Weak transcription	HMEC	breast
23	chr8:66935000-66938600	Weak transcription	NHEK	skin
24	chr8:66935000-66938800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:66935000-66938800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:66935000-66938800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:66935000-66938800	Weak transcription	Fetal Intestine Small	intestine
28	chr8:66935200-66938600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:66935400-66938400	Weak transcription	Hela-S3	cervix
30	chr8:66935400-66938600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:66935400-66938800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:66935400-66938800	Weak transcription	Left Ventricle	heart
33	chr8:66935400-66938800	Weak transcription	HepG2	liver
34	chr8:66935400-66945800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr8:66935600-66938600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:66935600-66938600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr8:66935600-66938600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr8:66935600-66938600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:66935600-66938600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:66935600-66938600	Weak transcription	Fetal Thymus	thymus
41	chr8:66935600-66938800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:66935600-66938800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:66935600-66938800	Weak transcription	Adipose Nuclei	Adipose
44	chr8:66935600-66938800	Weak transcription	NHDF-Ad	bronchial
45	chr8:66935600-66938800	Weak transcription	NHLF	lung
46	chr8:66935800-66938600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr8:66935800-66938600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr8:66936200-66938600	Weak transcription	Primary T cells from cord blood	blood
49	chr8:66936200-66938600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr8:66936200-66938600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links