Variant report

Variant	rs6990209
Chromosome Location	chr8:66902034-66902035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66837771..66840064-chr8:66901193..66903433,2	MCF-7	breast:
2	chr8:66894580..66896752-chr8:66901785..66904644,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10092435	0.84[EUR][1000 genomes]
rs10097206	0.85[EUR][1000 genomes]
rs10097560	0.85[EUR][1000 genomes]
rs10098417	0.86[EUR][1000 genomes]
rs10104877	0.85[EUR][1000 genomes]
rs11988360	0.85[EUR][1000 genomes]
rs11995587	0.81[EUR][1000 genomes]
rs11995702	0.84[EUR][1000 genomes]
rs11997658	0.86[EUR][1000 genomes]
rs12114319	0.86[EUR][1000 genomes]
rs16932411	0.81[EUR][1000 genomes]
rs2357566	0.86[EUR][1000 genomes]
rs2357568	0.86[EUR][1000 genomes]
rs2357569	0.86[EUR][1000 genomes]
rs2357577	0.85[EUR][1000 genomes]
rs2357579	0.86[EUR][1000 genomes]
rs2357657	0.84[EUR][1000 genomes]
rs28402886	0.86[EUR][1000 genomes]
rs28605672	0.86[EUR][1000 genomes]
rs2884235	0.82[EUR][1000 genomes]
rs4262311	0.84[EUR][1000 genomes]
rs4317552	0.86[EUR][1000 genomes]
rs4355757	0.81[EUR][1000 genomes]
rs4380924	0.86[EUR][1000 genomes]
rs4637811	0.85[EUR][1000 genomes]
rs55861240	0.82[EUR][1000 genomes]
rs55864718	0.81[EUR][1000 genomes]
rs60020249	0.86[EUR][1000 genomes]
rs60520895	0.86[EUR][1000 genomes]
rs60667481	0.86[EUR][1000 genomes]
rs62506639	0.92[ASN][1000 genomes]
rs6472241	0.86[EUR][1000 genomes]
rs6472242	0.86[EUR][1000 genomes]
rs6982577	0.83[EUR][1000 genomes]
rs6983945	0.86[EUR][1000 genomes]
rs6985149	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6989099	0.82[EUR][1000 genomes]
rs6989850	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6992002	0.86[EUR][1000 genomes]
rs6996761	0.86[EUR][1000 genomes]
rs7002734	0.83[EUR][1000 genomes]
rs7003160	0.86[EUR][1000 genomes]
rs7006789	0.84[EUR][1000 genomes]
rs7010113	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7010679	0.84[EUR][1000 genomes]
rs7017618	0.86[EUR][1000 genomes]
rs7465415	0.86[EUR][1000 genomes]
rs7812954	0.82[EUR][1000 genomes]
rs9694378	0.86[EUR][1000 genomes]
rs9918852	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66894800-66904000	Weak transcription	Primary T cells from cord blood	blood
2	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
3	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:66900600-66904600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66900800-66904400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:66901800-66903000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links