Variant report

Variant	rs2357666
Chromosome Location	chr8:66954615-66954616
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:66954198-66954678	MCF10A-Er-Src	breast:	n/a	chr8:66954660-66954672
2	FOS	chr8:66954210-66954637	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr8:66954355-66954641	MCF10A-Er-Src	breast:	n/a	n/a
4	FOXA2	chr8:66954245-66954840	A549	lung:	n/a	n/a
5	CEBPB	chr8:66954178-66954725	IMR90	lung:	n/a	n/a
6	FOS	chr8:66954248-66954648	MCF10A-Er-Src	breast:	n/a	n/a
7	FOSL2	chr8:66954134-66954654	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753081..66754975-chr8:66954019..66955590,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC5B	TF binding region
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10092435	0.81[EUR][1000 genomes]
rs10098417	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs10104877	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs11988360	0.96[CEU][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs11991974	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs11995443	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs11996694	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs11997658	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs12114319	0.96[CEU][hapmap];0.84[JPT][hapmap]
rs16932411	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2357566	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2357657	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2357663	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2884235	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs4262311	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs4355757	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs4380924	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs55876952	0.97[ASN][1000 genomes]
rs6981354	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs6982577	0.81[EUR][1000 genomes]
rs6983945	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs6992002	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs6994799	0.87[JPT][hapmap]
rs6996761	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs6997496	0.86[JPT][hapmap]
rs7002734	0.81[EUR][1000 genomes]
rs7006789	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs7010679	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs7011042	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs7017618	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs7465415	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs7821284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832776	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:66950400-66958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66953000-66955000	Weak transcription	Psoas Muscle	Psoas
5	chr8:66954000-66954800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:66954000-66954800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:66954000-66955200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:66954200-66955400	Weak transcription	Gastric	stomach
9	chr8:66954400-66955000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:66954400-66955400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:66954400-66955800	Enhancers	Stomach Mucosa	stomach
12	chr8:66954600-66954800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:66954600-66954800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:66954600-66955200	Enhancers	A549	lung
15	chr8:66954600-66955400	Enhancers	NHDF-Ad	bronchial
16	chr8:66954600-66955400	Enhancers	Osteobl	bone
17	chr8:66954600-66955800	Enhancers	NHLF	lung
18	chr8:66954600-66960200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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