The 2.0 version of rSNPBase

Variant report

Variant rs56254331
Chromosome Location chr19:41826020-41826021
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41817000-41827800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:41817200-41827200 Weak transcription Right Atrium heart
3 chr19:41817600-41827600 Strong transcription Fetal Stomach stomach
4 chr19:41817800-41827000 Strong transcription Fetal Muscle Leg muscle
5 chr19:41817800-41827200 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr19:41817800-41828800 Strong transcription Fetal Intestine Small intestine
7 chr19:41817800-41829200 Weak transcription Fetal Brain Male brain
8 chr19:41818000-41827200 Strong transcription Cortex derived primary cultured neurospheres brain
9 chr19:41818000-41828800 Weak transcription Hela-S3 cervix
10 chr19:41818000-41829000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr19:41818200-41826800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr19:41818200-41826800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr19:41818200-41827200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr19:41818200-41827200 Strong transcription Sigmoid Colon Sigmoid Colon
15 chr19:41818200-41827400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr19:41818200-41827400 Strong transcription Osteobl bone
17 chr19:41818200-41827600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr19:41818200-41828400 Strong transcription Rectal Mucosa Donor 29 rectum
19 chr19:41818200-41831600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
20 chr19:41818400-41827000 Strong transcription HUES48 Cell Line embryonic stem cell
21 chr19:41818400-41827200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr19:41818400-41827200 Strong transcription Stomach Smooth Muscle stomach
23 chr19:41818400-41827400 Strong transcription Primary neutrophils fromperipheralblood blood
24 chr19:41818400-41827400 Strong transcription Fetal Thymus thymus
25 chr19:41818400-41829000 Strong transcription Fetal Intestine Large intestine
26 chr19:41818400-41831200 Strong transcription Thymus Thymus
27 chr19:41818600-41826200 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr19:41818600-41826400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr19:41818600-41827200 Strong transcription Lung lung
30 chr19:41818600-41854800 Strong transcription Dnd41 blood
31 chr19:41818800-41827000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
32 chr19:41819000-41827000 Strong transcription Fetal Muscle Trunk muscle
33 chr19:41819000-41827200 Strong transcription Adipose Nuclei Adipose
34 chr19:41819000-41827400 Strong transcription Primary monocytes fromperipheralblood blood
35 chr19:41819000-41827800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr19:41819000-41830600 Strong transcription Primary T regulatory cells fromperipheralblood blood
37 chr19:41819200-41829200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
38 chr19:41819400-41827600 Strong transcription Primary T helper cells PMA-I stimulated --
39 chr19:41819600-41827000 Strong transcription Primary T cells fromperipheralblood blood
40 chr19:41819600-41828600 Weak transcription Small Intestine intestine
41 chr19:41819600-41829000 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr19:41819800-41827400 Strong transcription Primary B cells from peripheral blood blood
43 chr19:41821200-41827000 Strong transcription Skeletal Muscle Male skeletal muscle
44 chr19:41821400-41827400 Strong transcription Liver Liver
45 chr19:41821400-41830400 Strong transcription Fetal Brain Female brain
46 chr19:41821600-41827200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr19:41821600-41827200 Strong transcription Muscle Satellite Cultured Cells --
48 chr19:41821600-41827200 Strong transcription Duodenum Mucosa Duodenum
49 chr19:41821600-41827400 Strong transcription Brain Hippocampus Middle brain
50 chr19:41821600-41830000 Strong transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015