Variant report
| Variant | rs56263742 |
|---|---|
| Chromosome Location | chr5:98039795-98039796 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98034269..98036713-chr5:98038711..98041425,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10067179 | 0.90[EUR][1000 genomes] |
| rs13361671 | 0.90[EUR][1000 genomes] |
| rs1605714 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17166262 | 0.83[EUR][1000 genomes] |
| rs17821701 | 0.89[AMR][1000 genomes] |
| rs2369266 | 0.90[EUR][1000 genomes] |
| rs57512238 | 0.89[AMR][1000 genomes] |
| rs6865482 | 0.89[AMR][1000 genomes] |
| rs6865814 | 0.94[AMR][1000 genomes] |
| rs6867815 | 0.90[EUR][1000 genomes] |
| rs6877710 | 0.90[EUR][1000 genomes] |
| rs73149540 | 0.90[EUR][1000 genomes] |
| rs73149544 | 0.90[EUR][1000 genomes] |
| rs73773505 | 0.89[AMR][1000 genomes] |
| rs73773524 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7732391 | 0.83[EUR][1000 genomes] |
| rs7737398 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029509 | chr5:97888644-98040172 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032060 | chr5:98022226-98093492 | Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv537817 | chr5:98022226-98093492 | Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98026000-98040000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
