Variant report

Variant	rs56273218
Chromosome Location	chr2:172166082-172166083
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172160256..172162303-chr2:172165777..172168746,2	MCF-7	breast:
2	chr2:172148292..172151097-chr2:172165915..172167870,2	K562	blood:
3	chr2:172163945..172166501-chr2:172172840..172175232,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16859368	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859371	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859373	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859377	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859380	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859386	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859390	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16859404	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16859405	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16859410	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17287497	0.85[ASN][1000 genomes]
rs17287624	0.81[ASN][1000 genomes]
rs1882378	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3731984	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3795996	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55711751	0.95[ASN][1000 genomes]
rs55715902	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55716501	0.84[EUR][1000 genomes]
rs55974181	0.81[EUR][1000 genomes]
rs56065525	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56239048	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56302833	0.95[ASN][1000 genomes]
rs57165050	0.92[EUR][1000 genomes]
rs61021737	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61502503	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759487	0.85[ASN][1000 genomes]
rs728651	0.95[ASN][1000 genomes]
rs72882363	0.85[ASN][1000 genomes]
rs73021048	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73976175	0.81[EUR][1000 genomes]
rs9646734	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172144200-172171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172150400-172166400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:172151600-172166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:172151600-172168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:172154600-172168600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:172161800-172167200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:172163800-172181400	Weak transcription	Gastric	stomach
8	chr2:172165600-172179400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:172165800-172166200	Weak transcription	HepG2	liver

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