Variant report

Variant	rs56273826
Chromosome Location	chr1:169477110-169477111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169431261..169433752-chr1:169476428..169478805,3	K562	blood:
2	chr1:169452842..169455607-chr1:169476881..169480160,5	K562	blood:
3	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
4	chr1:169461542..169463578-chr1:169476860..169479328,2	K562	blood:
5	chr1:169475668..169477747-chr1:169479800..169482071,3	MCF-7	breast:
6	chr1:169475712..169478057-chr1:169524218..169526063,2	MCF-7	breast:
7	chr1:169452842..169460813-chr1:169474364..169480814,10	K562	blood:
8	chr1:169451858..169456935-chr1:169476541..169486862,15	MCF-7	breast:
9	chr1:169475240..169477243-chr1:169482171..169484444,2	MCF-7	breast:
10	chr1:169474592..169479041-chr1:169479760..169483418,4	K562	blood:
11	chr1:169476802..169481525-chr1:169483770..169486854,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74121674	1.00[AMR][1000 genomes]
rs9332593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332623	0.95[AFR][1000 genomes]
rs9332634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332658	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169472400-169477200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:169473800-169477600	Weak transcription	Stomach Mucosa	stomach
3	chr1:169475800-169481600	Enhancers	Liver	Liver
4	chr1:169476600-169478600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr1:169476800-169478200	Flanking Active TSS	HepG2	liver
6	chr1:169476800-169478400	Enhancers	A549	lung
7	chr1:169477000-169477400	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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