Variant report

Variant	rs9332634
Chromosome Location	chr1:169495569-169495570
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169449894..169459462-chr1:169475885..169501963,75	MCF-7	breast:
2	chr1:169352595..169354140-chr1:169494261..169496429,2	MCF-7	breast:
3	chr1:169475721..169488506-chr1:169493331..169501885,21	MCF-7	breast:
4	chr1:169483273..169484944-chr1:169493711..169496257,2	MCF-7	breast:
5	chr1:169452411..169456753-chr1:169494976..169501006,10	MCF-7	breast:
6	chr1:169454264..169456422-chr1:169495447..169500944,4	K562	blood:
7	chr1:169460825..169464071-chr1:169495499..169498354,3	MCF-7	breast:
8	chr1:169454264..169456897-chr1:169495447..169498143,3	K562	blood:
9	chr1:169347200..169349790-chr1:169495385..169498063,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000198734	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56273826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121674	1.00[AMR][1000 genomes]
rs9332593	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332623	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9332658	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872533	chr1:169490401-169508576	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169483200-169496800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169483800-169496800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr1:169484800-169501000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:169485400-169510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:169487400-169501000	Weak transcription	Right Ventricle	heart
6	chr1:169490600-169496200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:169490800-169496200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:169490800-169496800	Weak transcription	Pancreas	Pancrea
9	chr1:169490800-169496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:169491200-169497000	Weak transcription	Small Intestine	intestine
11	chr1:169491600-169500800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:169492000-169499800	Weak transcription	Left Ventricle	heart
13	chr1:169493000-169496000	Genic enhancers	Liver	Liver
14	chr1:169494000-169496200	Weak transcription	Placenta	Placenta
15	chr1:169494000-169496800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr1:169494000-169502800	Strong transcription	HepG2	liver
17	chr1:169494400-169495600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:169494400-169496400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:169494400-169498000	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:169494800-169497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:169494800-169499200	Enhancers	Stomach Mucosa	stomach
22	chr1:169495000-169496200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:169495000-169497800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:169495200-169495600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:169495200-169497800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr1:169495200-169498600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:169495400-169496400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:169495400-169498200	Weak transcription	Hela-S3	cervix

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