Variant report

Variant	rs56277835
Chromosome Location	chr16:72317655-72317656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13337578	0.92[ASN][1000 genomes]
rs16970751	1.00[ASN][1000 genomes]
rs17605951	1.00[ASN][1000 genomes]
rs28666905	1.00[ASN][1000 genomes]
rs56003552	1.00[ASN][1000 genomes]
rs56007369	1.00[ASN][1000 genomes]
rs56168719	1.00[ASN][1000 genomes]
rs56343858	0.89[ASN][1000 genomes]
rs56361569	0.83[ASN][1000 genomes]
rs726887	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1059599	chr16:72219769-72342170	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1066473	chr16:72229094-72373598	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv906897	chr16:72283147-72326375	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72297800-72318000	Weak transcription	Thymus	Thymus
2	chr16:72302600-72332000	Weak transcription	Primary B cells from cord blood	blood
3	chr16:72306600-72317800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:72313000-72318200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:72313400-72323000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr16:72315600-72318200	Weak transcription	HMEC	breast
7	chr16:72315600-72353600	Weak transcription	Dnd41	blood
8	chr16:72315800-72320600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:72316000-72319600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr16:72316000-72323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:72316600-72334800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:72317000-72318200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:72317000-72319000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:72317200-72318400	Enhancers	Lung	lung
15	chr16:72317400-72318000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:72317400-72318600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:72317400-72319000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:72317400-72331800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr16:72317600-72318600	Strong transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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