Variant report

Variant	rs56361569
Chromosome Location	chr16:72351331-72351332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16970751	0.83[ASN][1000 genomes]
rs16970809	0.90[EUR][1000 genomes]
rs17605951	0.83[ASN][1000 genomes]
rs28666905	0.83[ASN][1000 genomes]
rs45472394	0.87[EUR][1000 genomes]
rs45475692	0.87[EUR][1000 genomes]
rs4788630	0.87[EUR][1000 genomes]
rs55824865	0.87[EUR][1000 genomes]
rs55847921	0.84[EUR][1000 genomes]
rs56003552	0.83[ASN][1000 genomes]
rs56007369	0.83[ASN][1000 genomes]
rs56099269	0.90[EUR][1000 genomes]
rs56168719	0.83[ASN][1000 genomes]
rs56269540	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56277835	0.83[ASN][1000 genomes]
rs56343858	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61705884	1.00[AFR][1000 genomes]
rs726887	1.00[ASN][1000 genomes]
rs9923937	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1066473	chr16:72229094-72373598	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1063172	chr16:72342110-72537808	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv542947	chr16:72342110-72537808	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1067525	chr16:72342110-72602796	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv542948	chr16:72342110-72602796	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72315600-72353600	Weak transcription	Dnd41	blood
2	chr16:72340000-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:72343400-72353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:72345400-72359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:72345600-72353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:72347000-72353600	Weak transcription	Pancreas	Pancrea
7	chr16:72347000-72355400	Weak transcription	Gastric	stomach
8	chr16:72349200-72352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr16:72349400-72353600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:72350000-72352400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr16:72350400-72351800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:72350400-72351800	Enhancers	Fetal Brain Male	brain
13	chr16:72350400-72352000	Enhancers	NHDF-Ad	bronchial
14	chr16:72350400-72352200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:72350400-72352400	Enhancers	Primary hematopoietic stem cells	blood
16	chr16:72350600-72351800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:72350600-72351800	Enhancers	Adipose Nuclei	Adipose
18	chr16:72350600-72351800	Enhancers	Osteobl	bone
19	chr16:72350600-72352000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr16:72350600-72352000	Enhancers	HSMMtube	muscle
21	chr16:72350800-72351400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr16:72351000-72352000	Enhancers	HSMM	muscle
23	chr16:72351200-72351600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:72351200-72351600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr16:72351200-72351800	Enhancers	Fetal Lung	lung
26	chr16:72351200-72351800	Enhancers	NHLF	lung
27	chr16:72351200-72352000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links