Variant report

Variant	rs56278132
Chromosome Location	chr9:13865637-13865638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1410020	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16931045	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17820706	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17820953	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55820659	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56268017	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58756259	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713943	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713944	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713945	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713949	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713950	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713951	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72713952	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72713953	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713954	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713955	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713956	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713957	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72713959	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713960	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713961	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713962	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713964	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713965	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713966	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72713969	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72713970	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713972	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713973	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713974	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713975	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713976	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713977	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713978	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72713979	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
3	chr9:13864600-13865800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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