Variant report

Variant	rs16931045
Chromosome Location	chr9:13861427-13861428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10961291	0.80[ASW][hapmap]
rs1410020	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931065	1.00[ASN][1000 genomes]
rs16931066	1.00[ASN][1000 genomes]
rs16931072	1.00[ASN][1000 genomes]
rs17820706	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820953	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820659	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56043951	1.00[ASN][1000 genomes]
rs56268017	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56278132	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58756259	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474794	0.80[ASW][hapmap]
rs72713943	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713944	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713945	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713947	1.00[ASN][1000 genomes]
rs72713949	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713950	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713951	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713952	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713953	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713954	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713955	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713956	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713957	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713959	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713960	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713961	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713962	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713964	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713965	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713966	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713969	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713970	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713972	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713973	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713974	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713975	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713976	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713977	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713978	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713979	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713980	1.00[ASN][1000 genomes]
rs72713981	1.00[ASN][1000 genomes]
rs72713982	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13856400-13862600	Weak transcription	Left Ventricle	heart
3	chr9:13857600-13863000	Weak transcription	HSMM	muscle
4	chr9:13857800-13862000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:13858200-13862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:13858800-13861800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:13858800-13862200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:13859400-13862600	Weak transcription	Fetal Heart	heart
9	chr9:13860000-13861600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:13860000-13862000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:13860000-13862200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:13860200-13861600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:13860200-13861600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:13860200-13862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:13860200-13862400	Enhancers	Fetal Lung	lung
16	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
17	chr9:13860400-13863200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:13860600-13861800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:13860600-13861800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:13860600-13864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:13860800-13861800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:13861000-13861600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:13861000-13861600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:13861000-13862000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:13861000-13863600	Enhancers	Fetal Muscle Leg	muscle
27	chr9:13861200-13861600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:13861200-13861600	Enhancers	Fetal Stomach	stomach
29	chr9:13861400-13862000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr9:13861400-13862400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:13861400-13862600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:13861400-13862600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links