Variant report

Variant	rs72713980
Chromosome Location	chr9:13876638-13876639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13876520..13879167-chr9:14313329..14315109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1410020	1.00[ASN][1000 genomes]
rs16931045	1.00[ASN][1000 genomes]
rs16931065	1.00[ASN][1000 genomes]
rs16931066	1.00[ASN][1000 genomes]
rs16931072	1.00[ASN][1000 genomes]
rs17820706	1.00[ASN][1000 genomes]
rs17820953	1.00[ASN][1000 genomes]
rs55820659	1.00[ASN][1000 genomes]
rs56043951	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268017	1.00[ASN][1000 genomes]
rs58756259	1.00[ASN][1000 genomes]
rs72713943	1.00[ASN][1000 genomes]
rs72713944	1.00[ASN][1000 genomes]
rs72713945	1.00[ASN][1000 genomes]
rs72713947	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713949	1.00[ASN][1000 genomes]
rs72713950	1.00[ASN][1000 genomes]
rs72713951	1.00[ASN][1000 genomes]
rs72713952	1.00[ASN][1000 genomes]
rs72713953	1.00[ASN][1000 genomes]
rs72713954	1.00[ASN][1000 genomes]
rs72713955	1.00[ASN][1000 genomes]
rs72713956	1.00[ASN][1000 genomes]
rs72713957	1.00[ASN][1000 genomes]
rs72713959	1.00[ASN][1000 genomes]
rs72713960	1.00[ASN][1000 genomes]
rs72713961	1.00[ASN][1000 genomes]
rs72713962	1.00[ASN][1000 genomes]
rs72713964	1.00[ASN][1000 genomes]
rs72713965	1.00[ASN][1000 genomes]
rs72713966	1.00[ASN][1000 genomes]
rs72713969	1.00[ASN][1000 genomes]
rs72713970	1.00[ASN][1000 genomes]
rs72713972	1.00[ASN][1000 genomes]
rs72713973	1.00[ASN][1000 genomes]
rs72713974	1.00[ASN][1000 genomes]
rs72713975	1.00[ASN][1000 genomes]
rs72713976	1.00[ASN][1000 genomes]
rs72713977	1.00[ASN][1000 genomes]
rs72713978	1.00[ASN][1000 genomes]
rs72713979	1.00[ASN][1000 genomes]
rs72713981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
2	chr9:13875800-13877000	Enhancers	Fetal Muscle Leg	muscle
3	chr9:13876400-13878200	Enhancers	Fetal Heart	heart

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