Variant report

Variant	rs56278225
Chromosome Location	chr5:128252603-128252604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10520015	0.85[AFR][1000 genomes]
rs34217034	0.85[AFR][1000 genomes]
rs55721000	0.85[AFR][1000 genomes]
rs55745082	0.85[AFR][1000 genomes]
rs56105026	0.85[AFR][1000 genomes]
rs57393554	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6876157	1.00[EUR][1000 genomes]
rs72795284	0.85[AFR][1000 genomes]
rs72795288	0.85[AFR][1000 genomes]
rs72795290	0.85[AFR][1000 genomes]
rs72795292	0.85[AFR][1000 genomes]
rs72795293	0.85[AFR][1000 genomes]
rs72795295	0.85[AFR][1000 genomes]
rs72795296	0.85[AFR][1000 genomes]
rs72795301	0.85[AFR][1000 genomes]
rs72795302	0.85[AFR][1000 genomes]
rs72797158	0.85[AFR][1000 genomes]
rs72797159	0.85[AFR][1000 genomes]
rs72797161	0.85[AFR][1000 genomes]
rs73786508	1.00[EUR][1000 genomes]
rs73786522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7701236	0.85[AFR][1000 genomes]
rs7719508	0.85[AFR][1000 genomes]
rs7734179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128252400-128253000	Enhancers	Fetal Heart	heart

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