Variant report

Variant	rs57393554
Chromosome Location	chr5:128251637-128251638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10520015	0.90[AFR][1000 genomes]
rs34217034	0.90[AFR][1000 genomes]
rs55721000	0.90[AFR][1000 genomes]
rs55745082	0.90[AFR][1000 genomes]
rs56105026	0.90[AFR][1000 genomes]
rs56278225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59361020	0.81[AFR][1000 genomes]
rs6876157	1.00[EUR][1000 genomes]
rs72795284	0.90[AFR][1000 genomes]
rs72795288	0.90[AFR][1000 genomes]
rs72795290	0.90[AFR][1000 genomes]
rs72795292	0.90[AFR][1000 genomes]
rs72795293	0.90[AFR][1000 genomes]
rs72795295	0.90[AFR][1000 genomes]
rs72795296	0.90[AFR][1000 genomes]
rs72795301	0.90[AFR][1000 genomes]
rs72795302	0.90[AFR][1000 genomes]
rs72797158	0.90[AFR][1000 genomes]
rs72797159	0.90[AFR][1000 genomes]
rs72797161	0.90[AFR][1000 genomes]
rs73786508	1.00[EUR][1000 genomes]
rs73786509	0.81[AFR][1000 genomes]
rs73786511	0.81[AFR][1000 genomes]
rs73786522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73786554	0.81[AFR][1000 genomes]
rs7701236	0.90[AFR][1000 genomes]
rs7707504	0.81[AFR][1000 genomes]
rs7719508	0.90[AFR][1000 genomes]
rs7720356	0.81[AFR][1000 genomes]
rs7720753	0.81[AFR][1000 genomes]
rs7734179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128242200-128252400	Weak transcription	Fetal Heart	heart

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