The 2.0 version of rSNPBase

Variant report

Variant rs562919371
Chromosome Location chr3:119697654-119697655
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:119631000-119717000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr3:119656400-119700000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr3:119656600-119718400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr3:119662400-119700400 Weak transcription Fetal Intestine Large intestine
5 chr3:119664600-119700200 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr3:119664600-119702400 Weak transcription Primary T cells fromperipheralblood blood
7 chr3:119665800-119716800 Weak transcription HSMM muscle
8 chr3:119666000-119703000 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr3:119666200-119700200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr3:119666200-119700400 Weak transcription Fetal Thymus thymus
11 chr3:119681200-119723200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr3:119681800-119700400 Weak transcription Primary hematopoietic stem cells short term culture blood
13 chr3:119681800-119700800 Weak transcription Ovary ovary
14 chr3:119682000-119698000 Weak transcription Dnd41 blood
15 chr3:119682000-119700400 Weak transcription Primary B cells from cord blood blood
16 chr3:119682400-119700200 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr3:119683600-119701800 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr3:119684600-119699600 Weak transcription Fetal Kidney kidney
19 chr3:119687200-119716600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr3:119688200-119700400 Weak transcription Pancreas Pancrea
21 chr3:119689000-119710600 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr3:119689000-119711800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr3:119689000-119722600 Weak transcription Gastric stomach
24 chr3:119689800-119701600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr3:119692400-119701200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr3:119692400-119717000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr3:119692400-119723200 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr3:119692600-119700000 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr3:119693000-119700600 Weak transcription Primary hematopoietic stem cells blood
30 chr3:119693600-119732200 Weak transcription A549 lung
31 chr3:119694800-119700600 Weak transcription Duodenum Mucosa Duodenum
32 chr3:119695400-119699400 Weak transcription Fetal Lung lung
33 chr3:119696200-119698000 Enhancers HSMMtube muscle
34 chr3:119696200-119698400 Enhancers Psoas Muscle Psoas
35 chr3:119696200-119698400 Enhancers Right Ventricle heart
36 chr3:119696200-119698400 Enhancers Skeletal Muscle Male skeletal muscle
37 chr3:119696200-119698400 Enhancers Skeletal Muscle Female skeletal muscle
38 chr3:119696400-119700400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr3:119696400-119701400 Weak transcription Brain Cingulate Gyrus brain
40 chr3:119696400-119703400 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr3:119696400-119708800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr3:119696400-119709200 Weak transcription HMEC breast
43 chr3:119696800-119698200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr3:119696800-119703400 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr3:119697000-119698400 Strong transcription Fetal Intestine Small intestine
46 chr3:119697000-119704600 Weak transcription NHEK skin
47 chr3:119697200-119697800 Strong transcription Fetal Stomach stomach
48 chr3:119697200-119698200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr3:119697200-119698200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr3:119697200-119700400 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015