Variant report

Variant	rs56292208
Chromosome Location	chr15:77899648-77899649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77891327..77896574-chr15:77898422..77902980,9	K562	blood:
2	chr15:77898597..77902901-chr15:77907031..77910421,4	K562	blood:
3	chr15:77899584..77901870-chr15:77910990..77913716,3	K562	blood:
4	chr15:77899424..77903075-chr15:77914224..77917029,3	K562	blood:
5	chr15:77894564..77896146-chr15:77898435..77900182,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072658	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11853396	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11856468	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12438314	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12591110	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2667773	0.85[EUR][1000 genomes]
rs3743481	0.86[ASN][1000 genomes]
rs55722502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55745559	0.99[ASN][1000 genomes]
rs55978935	0.99[ASN][1000 genomes]
rs56188061	0.99[ASN][1000 genomes]
rs56381229	0.99[ASN][1000 genomes]
rs58102377	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7179753	0.99[ASN][1000 genomes]
rs8033468	0.99[ASN][1000 genomes]
rs8034247	0.99[ASN][1000 genomes]
rs8037691	0.99[ASN][1000 genomes]
rs907389	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1036749	chr15:77884026-77912408	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77895800-77899800	Enhancers	Fetal Heart	heart
2	chr15:77895800-77901200	Enhancers	Fetal Muscle Leg	muscle
3	chr15:77896200-77900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr15:77896200-77900600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:77896400-77900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:77896600-77901400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:77896800-77899800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:77896800-77901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:77897000-77901000	Enhancers	Right Atrium	heart
10	chr15:77897200-77900200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr15:77897200-77901800	Enhancers	K562	blood
12	chr15:77897200-77903000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:77897400-77899800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr15:77897400-77900000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr15:77897400-77900200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:77897400-77900800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:77897400-77901000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr15:77897400-77901400	Enhancers	Brain Angular Gyrus	brain
19	chr15:77897400-77901400	Enhancers	Brain Cingulate Gyrus	brain
20	chr15:77897400-77901400	Enhancers	Brain Hippocampus Middle	brain
21	chr15:77897400-77901600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr15:77897400-77903800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:77897600-77900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:77897600-77900400	Enhancers	Right Ventricle	heart
25	chr15:77897600-77901800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:77897800-77899800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr15:77897800-77900000	Enhancers	Spleen	Spleen
28	chr15:77897800-77901800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:77898000-77899800	Enhancers	Ovary	ovary
30	chr15:77898000-77903800	Weak transcription	Fetal Brain Female	brain
31	chr15:77898200-77900200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr15:77898200-77900600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr15:77898200-77901400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr15:77898200-77902000	Enhancers	Placenta	Placenta
35	chr15:77898400-77900200	Weak transcription	Brain Germinal Matrix	brain
36	chr15:77898400-77906400	Weak transcription	Pancreas	Pancrea
37	chr15:77898600-77900000	Enhancers	Fetal Intestine Large	intestine
38	chr15:77898600-77900800	Enhancers	Fetal Stomach	stomach
39	chr15:77898600-77902200	Enhancers	Brain Substantia Nigra	brain
40	chr15:77898600-77903200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:77898800-77899800	Enhancers	Fetal Lung	lung
42	chr15:77898800-77900000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:77898800-77900000	Flanking Active TSS	Osteobl	bone
44	chr15:77898800-77900200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:77898800-77900400	Enhancers	Left Ventricle	heart
46	chr15:77898800-77900600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:77898800-77900800	Enhancers	NHDF-Ad	bronchial
48	chr15:77898800-77901000	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr15:77899000-77900000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:77899000-77900200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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