Variant report

Variant	rs56293208
Chromosome Location	chr6:54667719-54667720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54666819..54668967-chr6:54700012..54702691,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58064058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742826	0.95[EUR][1000 genomes]
rs73742827	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742828	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73742829	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742837	0.95[EUR][1000 genomes]
rs73742838	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs949796	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54653200-54667800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:54663000-54667800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:54666200-54668200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:54666200-54668200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:54666200-54668200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:54666200-54668200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:54666200-54668200	Enhancers	HMEC	breast
8	chr6:54666200-54669200	Enhancers	Fetal Intestine Large	intestine
9	chr6:54666400-54668000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:54666400-54668000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:54666400-54668400	Enhancers	NHLF	lung
12	chr6:54666600-54667800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:54666600-54668400	Enhancers	Hela-S3	cervix
14	chr6:54666600-54668400	Enhancers	NHEK	skin
15	chr6:54666600-54669400	Weak transcription	HSMMtube	muscle
16	chr6:54666800-54667800	Weak transcription	NH-A	brain
17	chr6:54666800-54668200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54667000-54668600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:54667200-54668000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:54667200-54668200	Enhancers	Stomach Mucosa	stomach
21	chr6:54667200-54668800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:54667200-54668800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:54667600-54667800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:54667600-54667800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:54667600-54668200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:54667600-54668200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:54667600-54668200	Enhancers	Osteobl	bone
28	chr6:54667600-54668400	Enhancers	HUES64 Cell Line	embryonic stem cell

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