Variant report

Variant	rs949796
Chromosome Location	chr6:54643527-54643528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1039692	1.00[CEU][hapmap]
rs1039696	1.00[CEU][hapmap]
rs17448241	1.00[CEU][hapmap]
rs17545325	1.00[CEU][hapmap]
rs56293208	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58064058	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742826	1.00[EUR][1000 genomes]
rs73742827	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742828	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54643000-54643600	Enhancers	Brain Angular Gyrus	brain
2	chr6:54643000-54644200	Enhancers	Brain Hippocampus Middle	brain
3	chr6:54643200-54643600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:54643400-54643800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:54643400-54643800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:54643400-54643800	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links