Variant report
| Variant | rs1039692 |
|---|---|
| Chromosome Location | chr6:54630866-54630867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:54627133..54632625-chr6:54707387..54713886,8 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KRASP1 | TF binding region |
| ENSG00000168143 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1039696 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17448241 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17545325 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2063116 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2063117 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs55776188 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs56054254 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73742805 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73743759 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7762869 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs949796 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv885901 | chr6:54588069-54635417 | Enhancers Weak transcription Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv885902 | chr6:54588069-54656673 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
