Variant report

Variant	rs73743759
Chromosome Location	chr6:54595589-54595590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54594502..54597427-chr6:54632424..54633945,2	MCF-7	breast:
2	chr6:54591002..54596706-chr6:54709941..54714732,14	MCF-7	breast:
3	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
4	chr6:54588605..54590894-chr6:54594243..54596836,3	MCF-7	breast:
5	chr6:54585837..54588493-chr6:54594744..54597239,2	MCF-7	breast:
6	chr6:54589684..54593022-chr6:54593846..54596999,3	MCF-7	breast:
7	chr6:54594451..54596147-chr6:54739921..54742591,2	MCF-7	breast:
8	chr6:54594616..54597518-chr6:54631395..54633965,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1039692	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1039696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484991	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1395625	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1395630	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885845	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16885849	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17446535	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17448241	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545325	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55776188	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73742805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743735	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73743738	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73743739	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73743740	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9296762	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54594200-54595600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54594400-54595600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54594600-54595600	Enhancers	Fetal Intestine Small	intestine
4	chr6:54595000-54595600	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:54595000-54595800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54595200-54595600	Enhancers	Brain Substantia Nigra	brain
7	chr6:54595200-54595600	Enhancers	Fetal Intestine Large	intestine
8	chr6:54595200-54595600	Enhancers	HMEC	breast
9	chr6:54595400-54595800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:54595400-54595800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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