Variant report

Variant	rs16885849
Chromosome Location	chr6:54560580-54560581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54558970..54566519-chr6:54708534..54713743,16	MCF-7	breast:
2	chr6:54560120..54562700-chr6:54564068..54565878,2	MCF-7	breast:
3	chr6:54559522..54567174-chr6:54707552..54714330,37	MCF-7	breast:
4	chr6:54559803..54567776-chr6:54579525..54585377,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1039696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1039699	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10484986	0.84[EUR][1000 genomes]
rs10484991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333250	0.84[EUR][1000 genomes]
rs12333325	0.84[EUR][1000 genomes]
rs1395625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395630	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885565	0.83[EUR][1000 genomes]
rs16885575	0.84[EUR][1000 genomes]
rs16885845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443543	0.85[EUR][1000 genomes]
rs17446535	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17448241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17540495	0.84[EUR][1000 genomes]
rs17540835	0.85[EUR][1000 genomes]
rs17545325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55776188	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56054254	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56210129	0.81[EUR][1000 genomes]
rs60806144	0.83[EUR][1000 genomes]
rs73742805	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73743735	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743740	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743759	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7759564	0.84[EUR][1000 genomes]
rs7771064	0.84[EUR][1000 genomes]
rs7771536	0.84[EUR][1000 genomes]
rs7771554	0.84[EUR][1000 genomes]
rs9296762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464104	0.84[EUR][1000 genomes]
rs9464105	0.84[EUR][1000 genomes]
rs9464106	0.84[EUR][1000 genomes]
rs9464108	0.84[EUR][1000 genomes]
rs9474920	0.81[EUR][1000 genomes]
rs9474921	0.84[EUR][1000 genomes]
rs9474922	0.84[EUR][1000 genomes]
rs9474923	0.84[EUR][1000 genomes]
rs9474924	0.84[EUR][1000 genomes]
rs9474926	0.84[EUR][1000 genomes]
rs9474927	0.84[EUR][1000 genomes]
rs9474928	0.84[EUR][1000 genomes]
rs9474929	0.84[EUR][1000 genomes]
rs9474930	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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