Variant report

Variant	rs17540495
Chromosome Location	chr6:54477649-54477650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1039699	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484983	0.87[AMR][1000 genomes]
rs10484986	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484991	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12333250	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333325	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395625	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1395630	0.84[EUR][1000 genomes]
rs16885549	0.82[AMR][1000 genomes]
rs16885557	0.87[AMR][1000 genomes]
rs16885559	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16885565	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885575	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885578	1.00[ASN][1000 genomes]
rs16885845	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16885849	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17443543	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17446535	0.84[EUR][1000 genomes]
rs17540835	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56210129	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60428561	1.00[ASN][1000 genomes]
rs60806144	0.95[EUR][1000 genomes]
rs62412294	1.00[ASN][1000 genomes]
rs62412295	1.00[ASN][1000 genomes]
rs62412296	1.00[ASN][1000 genomes]
rs73743735	0.84[EUR][1000 genomes]
rs73743738	0.84[EUR][1000 genomes]
rs73743739	0.84[EUR][1000 genomes]
rs73743740	0.84[EUR][1000 genomes]
rs7759564	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296762	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9464102	1.00[ASN][1000 genomes]
rs9464104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464105	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464106	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464108	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464109	1.00[ASN][1000 genomes]
rs9474920	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474923	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474924	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474926	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	1.00[ASN][1000 genomes]
rs9474933	1.00[ASN][1000 genomes]
rs9474935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54465800-54481800	Weak transcription	Aorta	Aorta
2	chr6:54467800-54479200	Weak transcription	Fetal Muscle Leg	muscle

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