Variant report

Variant	rs16885575
Chromosome Location	chr6:54478759-54478760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1039699	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484982	0.84[AMR][1000 genomes]
rs10484986	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484991	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12333250	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395625	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1395630	0.84[EUR][1000 genomes]
rs16885517	0.84[AMR][1000 genomes]
rs16885559	0.81[ASN][1000 genomes]
rs16885565	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885578	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885845	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16885849	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17443543	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17446535	0.84[EUR][1000 genomes]
rs17540495	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17540835	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56210129	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60428561	1.00[ASN][1000 genomes]
rs60806144	0.95[EUR][1000 genomes]
rs62412294	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62412295	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62412296	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743735	0.84[EUR][1000 genomes]
rs73743738	0.84[EUR][1000 genomes]
rs73743739	0.84[EUR][1000 genomes]
rs73743740	0.84[EUR][1000 genomes]
rs7759564	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771064	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771554	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296762	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9464100	0.84[AMR][1000 genomes]
rs9464102	1.00[ASN][1000 genomes]
rs9464104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464105	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464106	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464108	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464109	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474920	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474921	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474922	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474923	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474924	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474933	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474935	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54465800-54481800	Weak transcription	Aorta	Aorta
2	chr6:54467800-54479200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:54478600-54479400	Weak transcription	HSMM	muscle

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