Variant report

Variant	rs9474935
Chromosome Location	chr6:54483722-54483723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54483454..54486448-chr6:54709404..54710933,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1039699	0.93[ASN][1000 genomes]
rs10484986	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12333250	1.00[ASN][1000 genomes]
rs12333325	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885559	0.81[ASN][1000 genomes]
rs16885565	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885575	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16885578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443543	0.93[ASN][1000 genomes]
rs17448241	0.88[CHD][hapmap]
rs17540495	1.00[ASN][1000 genomes]
rs17540835	0.93[ASN][1000 genomes]
rs17545325	0.88[CHD][hapmap]
rs56210129	1.00[ASN][1000 genomes]
rs60428561	1.00[ASN][1000 genomes]
rs62412294	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759564	1.00[ASN][1000 genomes]
rs7771064	1.00[ASN][1000 genomes]
rs7771536	1.00[ASN][1000 genomes]
rs7771554	1.00[ASN][1000 genomes]
rs9464102	1.00[ASN][1000 genomes]
rs9464104	1.00[ASN][1000 genomes]
rs9464105	1.00[ASN][1000 genomes]
rs9464106	1.00[ASN][1000 genomes]
rs9464108	1.00[ASN][1000 genomes]
rs9464109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474920	1.00[ASN][1000 genomes]
rs9474921	1.00[ASN][1000 genomes]
rs9474922	1.00[ASN][1000 genomes]
rs9474923	1.00[ASN][1000 genomes]
rs9474924	1.00[ASN][1000 genomes]
rs9474926	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54482200-54483800	Enhancers	Fetal Intestine Small	intestine
3	chr6:54482400-54483800	Enhancers	HSMM	muscle

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