Variant report

Variant	rs17540835
Chromosome Location	chr6:54489815-54489816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1039699	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484983	0.81[AMR][1000 genomes]
rs10484986	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484991	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12333250	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333325	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1395625	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1395630	0.85[EUR][1000 genomes]
rs16885557	0.81[AMR][1000 genomes]
rs16885559	0.81[AMR][1000 genomes]
rs16885565	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885575	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885578	0.93[ASN][1000 genomes]
rs16885845	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16885849	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17443543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446535	0.85[EUR][1000 genomes]
rs17540495	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56210129	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60428561	0.93[ASN][1000 genomes]
rs60806144	0.97[EUR][1000 genomes]
rs62412294	0.93[ASN][1000 genomes]
rs62412295	0.93[ASN][1000 genomes]
rs62412296	0.93[ASN][1000 genomes]
rs73743735	0.85[EUR][1000 genomes]
rs73743738	0.85[EUR][1000 genomes]
rs73743739	0.85[EUR][1000 genomes]
rs73743740	0.85[EUR][1000 genomes]
rs7759564	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771064	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771536	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771554	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296762	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9464102	0.93[ASN][1000 genomes]
rs9464104	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464105	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464106	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464108	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464109	0.93[ASN][1000 genomes]
rs9474920	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474921	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474922	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474923	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474924	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474926	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474927	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474928	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474929	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474930	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474931	0.93[ASN][1000 genomes]
rs9474933	0.93[ASN][1000 genomes]
rs9474935	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv981146	chr6:54487057-54496676	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54489000-54490800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:54489200-54490400	Enhancers	Osteobl	bone
3	chr6:54489600-54490200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links