Variant report

Variant	rs1039699
Chromosome Location	chr6:54521101-54521102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484986	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484991	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12333250	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333325	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1395625	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1395630	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16885565	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885575	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16885578	0.93[ASN][1000 genomes]
rs16885845	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16885849	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17443543	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446535	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17540495	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17540835	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56210129	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60428561	0.93[ASN][1000 genomes]
rs60806144	0.92[EUR][1000 genomes]
rs62412294	0.93[ASN][1000 genomes]
rs62412295	0.93[ASN][1000 genomes]
rs62412296	0.93[ASN][1000 genomes]
rs73743735	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73743738	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73743739	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73743740	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7759564	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771064	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771536	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771554	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296762	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9464102	0.93[ASN][1000 genomes]
rs9464104	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464105	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464106	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464108	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9464109	0.93[ASN][1000 genomes]
rs9474920	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474921	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474922	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474923	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474924	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474926	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474927	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474928	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474929	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474930	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9474931	0.93[ASN][1000 genomes]
rs9474933	0.93[ASN][1000 genomes]
rs9474935	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54519000-54521200	Enhancers	Fetal Intestine Small	intestine
2	chr6:54520800-54521400	Enhancers	Fetal Intestine Large	intestine
3	chr6:54521000-54521200	Active TSS	Skeletal Muscle Male	skeletal muscle

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