Variant report

Variant	rs56210129
Chromosome Location	chr6:54471073-54471074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1039699	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10484986	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333250	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333325	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395625	0.81[EUR][1000 genomes]
rs1395630	0.81[EUR][1000 genomes]
rs16885553	0.80[AMR][1000 genomes]
rs16885559	0.81[ASN][1000 genomes]
rs16885565	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885575	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885578	1.00[ASN][1000 genomes]
rs16885845	0.81[EUR][1000 genomes]
rs16885849	0.81[EUR][1000 genomes]
rs17443543	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17446535	0.81[EUR][1000 genomes]
rs17540495	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17540835	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60428561	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60806144	0.92[EUR][1000 genomes]
rs62412294	1.00[ASN][1000 genomes]
rs62412295	1.00[ASN][1000 genomes]
rs62412296	1.00[ASN][1000 genomes]
rs6909601	0.80[AMR][1000 genomes]
rs73742133	0.80[AMR][1000 genomes]
rs73743735	0.81[EUR][1000 genomes]
rs73743738	0.81[EUR][1000 genomes]
rs73743739	0.81[EUR][1000 genomes]
rs73743740	0.81[EUR][1000 genomes]
rs7759564	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771064	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296762	0.81[EUR][1000 genomes]
rs9464102	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9464104	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464105	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464106	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464108	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464109	1.00[ASN][1000 genomes]
rs9474920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474922	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474923	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474924	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474926	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474927	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474928	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474929	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474930	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474931	1.00[ASN][1000 genomes]
rs9474933	1.00[ASN][1000 genomes]
rs9474935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3344278	chr6:54468818-54471366	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3360878	chr6:54469043-54471091	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv2584101	chr6:54469531-54471158	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54465800-54481800	Weak transcription	Aorta	Aorta
2	chr6:54467800-54479200	Weak transcription	Fetal Muscle Leg	muscle

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