Variant report

Variant	rs16885559
Chromosome Location	chr6:54465515-54465516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10484982	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484986	0.81[ASN][1000 genomes]
rs10484991	0.82[CEU][hapmap]
rs10948828	0.84[EUR][1000 genomes]
rs12333250	0.81[ASN][1000 genomes]
rs12333325	0.81[ASN][1000 genomes]
rs1395625	0.82[CEU][hapmap]
rs16885517	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16885549	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885553	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885557	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885565	0.81[ASN][1000 genomes]
rs16885575	0.81[ASN][1000 genomes]
rs16885578	0.81[ASN][1000 genomes]
rs16885845	0.82[CEU][hapmap]
rs16885849	0.82[CEU][hapmap]
rs17443543	0.81[AMR][1000 genomes]
rs17448241	1.00[CEU][hapmap]
rs17540495	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17540835	0.81[AMR][1000 genomes]
rs17545325	1.00[CEU][hapmap]
rs56210129	0.81[ASN][1000 genomes]
rs60428561	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62412294	0.81[ASN][1000 genomes]
rs62412295	0.81[ASN][1000 genomes]
rs62412296	0.81[ASN][1000 genomes]
rs6459015	0.84[EUR][1000 genomes]
rs6909601	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6918025	0.84[EUR][1000 genomes]
rs73742133	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7759564	0.81[ASN][1000 genomes]
rs7771064	0.81[ASN][1000 genomes]
rs7771536	0.81[ASN][1000 genomes]
rs7771554	0.81[ASN][1000 genomes]
rs9296762	0.82[CEU][hapmap]
rs9464100	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9464102	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9464104	0.81[ASN][1000 genomes]
rs9464105	0.81[ASN][1000 genomes]
rs9464106	0.81[ASN][1000 genomes]
rs9464108	0.81[ASN][1000 genomes]
rs9464109	0.81[ASN][1000 genomes]
rs9474920	0.81[ASN][1000 genomes]
rs9474921	0.81[ASN][1000 genomes]
rs9474922	0.81[ASN][1000 genomes]
rs9474923	0.81[ASN][1000 genomes]
rs9474924	0.81[ASN][1000 genomes]
rs9474926	0.81[ASN][1000 genomes]
rs9474927	0.81[ASN][1000 genomes]
rs9474928	0.81[ASN][1000 genomes]
rs9474929	0.81[ASN][1000 genomes]
rs9474930	0.81[ASN][1000 genomes]
rs9474931	0.81[ASN][1000 genomes]
rs9474933	0.81[ASN][1000 genomes]
rs9474935	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54464000-54467000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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