Variant report

Variant	rs16885553
Chromosome Location	chr6:54463382-54463383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54462717..54465444-chr6:54712732..54714446,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1039692	1.00[CEU][hapmap]
rs1039696	1.00[CEU][hapmap]
rs10484982	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948828	0.84[EUR][1000 genomes]
rs12333250	0.84[AMR][1000 genomes]
rs16885517	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16885549	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885559	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17448241	1.00[CEU][hapmap]
rs17545325	1.00[CEU][hapmap]
rs56210129	0.80[AMR][1000 genomes]
rs60428561	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6459015	0.84[EUR][1000 genomes]
rs6909601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918025	0.84[EUR][1000 genomes]
rs73742133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759564	0.84[AMR][1000 genomes]
rs7771064	0.80[AMR][1000 genomes]
rs7771536	0.80[AMR][1000 genomes]
rs7771554	0.80[AMR][1000 genomes]
rs9464100	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9464102	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9464104	0.80[AMR][1000 genomes]
rs9464105	0.84[AMR][1000 genomes]
rs9464106	0.84[AMR][1000 genomes]
rs9464108	0.84[AMR][1000 genomes]
rs9474920	0.80[AMR][1000 genomes]
rs9474921	0.80[AMR][1000 genomes]
rs9474922	0.80[AMR][1000 genomes]
rs9474923	0.84[AMR][1000 genomes]
rs9474924	0.84[AMR][1000 genomes]
rs949796	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54461600-54463800	Weak transcription	Osteobl	bone

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